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Tubulin-TN16 : RB3 stathmin-like domain complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SA0 PDB ENTRY 1SA0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 PEG, PIPES BUFFER, pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.91 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 328.53 α = 90 b = 328.53 β = 90 c = 54.41 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.978 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 50 98.3 0.074 15.1 8 36232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.7 3.79 97.9 0.605 3.16 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SA0 3.7 20 34182 1839 98.84 0.21194 0.20921 0.2671 0.26428 0.3008 RANDOM 42.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.51 -2.26 -4.51 6.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.885 r_angle_refined_deg 1.77 r_scangle_it 1.226 r_scbond_it 0.76 r_mcangle_it 0.444 r_symmetry_vdw_refined 0.346 r_nbd_refined 0.286 r_xyhbond_nbd_refined 0.237 r_mcbond_it 0.227 r_metal_ion_refined 0.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.885 r_angle_refined_deg 1.77 r_scangle_it 1.226 r_scbond_it 0.76 r_mcangle_it 0.444 r_symmetry_vdw_refined 0.346 r_nbd_refined 0.286 r_xyhbond_nbd_refined 0.237 r_mcbond_it 0.227 r_metal_ion_refined 0.223 r_symmetry_hbond_refined 0.147 r_chiral_restr 0.123 r_bond_refined_d 0.017 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14054 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 169
Software Software Software Name Purpose AMoRE phasing REFMAC refinement XDS data reduction XSCALE data scaling