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HCV NS5B genotype 1a in complex with 1,5 benzodiazepine inhibitor 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CSO PDB ENTRY 3CSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.75 293 5-8% PEG 6000, 100mM Mg-Salts, pH 6.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 46.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.525 α = 90 b = 271.306 β = 98.82 c = 61.007 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0073 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 136.08 91.2 0.088 3.3 2.3 247261 247261
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.63 92.5 0.43 1.7 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CSO 1.55 136.08 219871 219871 2226 89.82 0.17 0.17 0.18917 0.1741 RANDOM 13.667
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -0.1 -0.3 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.564 r_dihedral_angle_4_deg 14.587 r_dihedral_angle_3_deg 11.867 r_scangle_it 7.112 r_scbond_it 5.59 r_dihedral_angle_1_deg 5.189 r_mcangle_it 3.71 r_mcbond_it 3.173 r_mcbond_other 1.39 r_angle_refined_deg 1.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.564 r_dihedral_angle_4_deg 14.587 r_dihedral_angle_3_deg 11.867 r_scangle_it 7.112 r_scbond_it 5.59 r_dihedral_angle_1_deg 5.189 r_mcangle_it 3.71 r_mcbond_it 3.173 r_mcbond_other 1.39 r_angle_refined_deg 1.259 r_angle_other_deg 1.165 r_symmetry_vdw_other 0.28 r_nbd_refined 0.211 r_nbd_other 0.201 r_symmetry_hbond_refined 0.201 r_nbtor_refined 0.18 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.124 r_nbtor_other 0.077 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12985 Nucleic Acid Atoms Solvent Atoms 1570 Heterogen Atoms 254
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling