☰ Navigation Tabs
Discovery of novel inhibitors of PDE10A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O8H
Crystallization Crystal Properties Matthews coefficient Solvent content 2.67 53.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.963 α = 90 b = 120.963 β = 90 c = 82.806 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC M SINGLE WAVELENGTH 2 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 34.92 100 0.062 5.61 30572
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 100 0.257 5.5 5.31 3109
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2O8H 2 34.92 30571 2354 99.98 0.161 0.158 0.1707 0.195 0.2028 RANDOM 26.583
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 -0.48 -0.97 1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.863 r_scangle_it 3.738 r_scbond_it 2.279 r_mcangle_it 1.458 r_angle_refined_deg 1.328 r_angle_other_deg 0.845 r_mcbond_it 0.757 r_symmetry_vdw_other 0.272 r_symmetry_hbond_refined 0.248 r_nbd_other 0.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.863 r_scangle_it 3.738 r_scbond_it 2.279 r_mcangle_it 1.458 r_angle_refined_deg 1.328 r_angle_other_deg 0.845 r_mcbond_it 0.757 r_symmetry_vdw_other 0.272 r_symmetry_hbond_refined 0.248 r_nbd_other 0.233 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.181 r_nbtor_other 0.081 r_chiral_restr 0.079 r_bond_refined_d 0.014 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2488 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 42
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction