☰ Navigation Tabs
Crystal Structure of ScaR with bound Cd2+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HRS PDB entry 3HRS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6 298 1.6 M lithium sulfate, 0.05 M sodium cacodylate in the presence of 1 mM MnCl2 and 1 mM duplex DNA, pH 6.0, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.84 67.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.86 α = 90 b = 70.86 β = 90 c = 304.1 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0781 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30.25 92.9 0.084 0.084 4.251 3.7 18587
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.95 77.3 0.311 0.311 2.4 1.9 2187
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 3HRS 2.8 30.25 18453 1809 92.01 0.23 0.2323 0.282 0.2778 127.411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 15.366 15.366 -30.733
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.389 f_nbd_refined 4.111 f_angle_d 1.201 f_chiral_restr 0.078 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3399 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 12
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHENIX refinement PDB_EXTRACT data extraction