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Human PIK3C3 crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2M ammonium acetate
25% PEG3350
0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.51 51.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.297 α = 107.77 b = 96.491 β = 91.75 c = 150.679 γ = 92.41
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2009-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 19.84
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 19.84 77091 4076 99.04 0.19006 0.18663 0.25505 0.2343 RANDOM 33.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.5 r_dihedral_angle_3_deg 19.63 r_dihedral_angle_4_deg 19.478 r_dihedral_angle_1_deg 6.265 r_scangle_it 2.61 r_scbond_it 1.818 r_angle_refined_deg 1.503 r_mcbond_it 1.108 r_mcangle_it 1.018 r_angle_other_deg 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.5 r_dihedral_angle_3_deg 19.63 r_dihedral_angle_4_deg 19.478 r_dihedral_angle_1_deg 6.265 r_scangle_it 2.61 r_scbond_it 1.818 r_angle_refined_deg 1.503 r_mcbond_it 1.108 r_mcangle_it 1.018 r_angle_other_deg 0.96 r_symmetry_vdw_other 0.277 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.236 r_nbd_other 0.204 r_nbtor_refined 0.19 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.171 r_nbtor_other 0.094 r_mcbond_other 0.083 r_chiral_restr 0.078 r_xyhbond_nbd_other 0.064 r_bond_refined_d 0.014 r_bond_other_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21669 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling