☰ Navigation Tabs
Crystal Structure of human 14-3-3 sigma in Complex with Raf1 peptide (6mer)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YWT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1M Hepes/NaOH ph 7.5, 0.2M CaCl2, 28% PEG 400, 5% glycerol, 2mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.65 53.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.18 α = 90 b = 112.17 β = 90 c = 62.73 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.87314 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 34.03 99.1 0.055 14.8 5.5 134589 133400 -3 -3 12.532
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.1 97.5 0.397 3.9 16942
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1YWT 1.05 25 126774 6621 99.12 0.12971 0.12857 0.1273 0.1509 0.1484 RANDOM 9.982
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.9 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.404 r_dihedral_angle_4_deg 16.048 r_sphericity_free 15.637 r_dihedral_angle_3_deg 13.546 r_dihedral_angle_1_deg 12.089 r_sphericity_bonded 6.764 r_scangle_it 6.741 r_scbond_it 4.901 r_mcangle_it 3.108 r_rigid_bond_restr 2.464
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.404 r_dihedral_angle_4_deg 16.048 r_sphericity_free 15.637 r_dihedral_angle_3_deg 13.546 r_dihedral_angle_1_deg 12.089 r_sphericity_bonded 6.764 r_scangle_it 6.741 r_scbond_it 4.901 r_mcangle_it 3.108 r_rigid_bond_restr 2.464 r_angle_refined_deg 2.198 r_mcbond_it 2.113 r_angle_other_deg 1.159 r_mcbond_other 1.074 r_chiral_restr 0.16 r_bond_refined_d 0.028 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1909 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 4
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling