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Structural basis of YAP recognition by TEAD4 in the Hippo pathway
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 HANGING DROP 5.6 298 PEG10000, Mg Acetate, pH5.6, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 5.076 75.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.982 α = 90 b = 146.91 β = 90 c = 165.471 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 1 2008-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 74.346 99.9 0.06 0.06 14.2 3.6 61276
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 100 0.605 0.605 1.2 3.6 5928
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3 20 47233 2516 99.9 0.23893 0.23633 0.2548 0.28842 0.3045 RANDOM 28.077
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 2.52 -4.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.261 r_dihedral_angle_3_deg 21.748 r_dihedral_angle_4_deg 20.803 r_dihedral_angle_1_deg 9.271 r_scangle_it 1.951 r_angle_refined_deg 1.876 r_scbond_it 1.127 r_mcangle_it 0.898 r_mcbond_it 0.467 r_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.261 r_dihedral_angle_3_deg 21.748 r_dihedral_angle_4_deg 20.803 r_dihedral_angle_1_deg 9.271 r_scangle_it 1.951 r_angle_refined_deg 1.876 r_scbond_it 1.127 r_mcangle_it 0.898 r_mcbond_it 0.467 r_chiral_restr 0.111 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7856 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction