☰ Navigation Tabs
Crystal Structure of PhzA/B from Burkholderia cepacia R18194 in simultaneous complex with racemic 5-bromo-2-(piperidin-3-ylamino)benzoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 284 16-20% (w/v) PEG3350, 0.2 M NH4OAc, 0.1 M Bis-Tris pH 6.1-6.7;
complex prepared by overnight soaking in mother liquor
containing 4 mM racemic 5-bromo-2-(piperidin-3-ylamino)benzoic acid, vapor diffusion, hanging drop, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.26 45.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.66 α = 90 b = 64.66 β = 90 c = 161.31 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD SI(111) 2007-10-27 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.7 99.8 37044 -3 37.23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.9 0.442 4.2
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 1.8 19.7 37044 1837 99.9 0.177 0.175 0.1817 0.217 0.2234 23.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.444 r_dihedral_angle_4_deg 17.423 r_dihedral_angle_3_deg 14.531 r_dihedral_angle_1_deg 6.238 r_scangle_it 5.952 r_scbond_it 3.732 r_mcangle_it 2.404 r_angle_refined_deg 1.927 r_mcbond_it 1.356 r_angle_other_deg 0.984
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.444 r_dihedral_angle_4_deg 17.423 r_dihedral_angle_3_deg 14.531 r_dihedral_angle_1_deg 6.238 r_scangle_it 5.952 r_scbond_it 3.732 r_mcangle_it 2.404 r_angle_refined_deg 1.927 r_mcbond_it 1.356 r_angle_other_deg 0.984 r_mcbond_other 0.473 r_symmetry_vdw_other 0.403 r_symmetry_hbond_refined 0.302 r_symmetry_vdw_refined 0.298 r_xyhbond_nbd_refined 0.216 r_chiral_restr 0.132 r_bond_refined_d 0.026 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2538 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 68
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction