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HCV NS3/NS4A complexed with Non-covalent macrocyclic compound TMC435
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KF2 PDB ENTRY 3KF2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 0.1M Hepes, 1.9M Ammonium sulphate, 0.35M NaCl, 10% Isopropanol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.22 44.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.034 α = 92.44 b = 54.454 β = 93.16 c = 85.495 γ = 116.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 1 2008-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97550 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 48.8 95.9 0.151 0.151 10 4.2 30282 29045 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.53 95.9 0.683 0.683 2.1 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3KF2 2.4 48.8 30282 27584 1461 95.92 0.199 0.19882 0.19625 0.1977 0.24607 0.247 RANDOM 24.372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.04 0.01 -0.07 0.01 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.988 r_dihedral_angle_4_deg 22.42 r_dihedral_angle_3_deg 21.373 r_dihedral_angle_1_deg 7.32 r_scangle_it 3.177 r_scbond_it 2.004 r_angle_refined_deg 1.955 r_mcangle_it 1.33 r_mcbond_it 0.775 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.988 r_dihedral_angle_4_deg 22.42 r_dihedral_angle_3_deg 21.373 r_dihedral_angle_1_deg 7.32 r_scangle_it 3.177 r_scbond_it 2.004 r_angle_refined_deg 1.955 r_mcangle_it 1.33 r_mcbond_it 0.775 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.283 r_symmetry_hbond_refined 0.237 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.118 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5592 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 236
Software Software Software Name Purpose DNA data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling