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Crystal structure of murine Ig-beta (CD79b) in the monomeric form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 20% Peg 750 MME, 0.2M MgCl2, 100mM Na Citrate, pH 5.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.62 23.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.63 α = 90 b = 79.72 β = 90 c = 34.32 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 0.065 21.5 5.5 10471 -3 20.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 0.317 2.6 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 39.87 10071 515 93.75 0.18758 0.187 0.1967 0.197 0.205 RANDOM 31.694
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 1.54 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.963 r_dihedral_angle_4_deg 18.123 r_scangle_it 16.397 r_scbond_it 13.477 r_dihedral_angle_3_deg 11.74 r_mcbond_it 10.383 r_mcangle_it 10 r_dihedral_angle_1_deg 4.724 r_angle_other_deg 2.53 r_mcbond_other 2.428
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.963 r_dihedral_angle_4_deg 18.123 r_scangle_it 16.397 r_scbond_it 13.477 r_dihedral_angle_3_deg 11.74 r_mcbond_it 10.383 r_mcangle_it 10 r_dihedral_angle_1_deg 4.724 r_angle_other_deg 2.53 r_mcbond_other 2.428 r_angle_refined_deg 1.183 r_nbd_other 0.277 r_nbd_refined 0.261 r_symmetry_vdw_other 0.255 r_chiral_restr 0.246 r_xyhbond_nbd_refined 0.225 r_symmetry_vdw_refined 0.22 r_nbtor_refined 0.192 r_symmetry_hbond_refined 0.132 r_nbtor_other 0.091 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 752 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement CNS refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing