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Crystal Structure of the Human GST Pi C47S/Y108V Double Mutant in Complex with the Ethacrynic Acid-Glutathione Conjugate (Grown in the Absence of the Reducing Agent DTT)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 4mg/ml, 267mM calcium acetate, 100mM MES pH 6.0, 20% (w/v) PEG 8000 , VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.54 51.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.902 α = 90 b = 89.348 β = 90.07 c = 69.383 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 34.691 97.7 0.132 0.132 0.153 0.076 15.5 3.9 13960 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 96.6 0.336 0.336 0.39 0.19 1.8 3.9 2000
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Difference Fourier THROUGHOUT 2.6 34.69 13959 693 97.43 0.169 0.165 0.1678 0.254 0.2544 RANDOM 14.491
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 0.18 -2.06 1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.036 r_dihedral_angle_4_deg 16.389 r_dihedral_angle_3_deg 15.67 r_dihedral_angle_1_deg 7 r_scangle_it 3.436 r_scbond_it 2.28 r_angle_refined_deg 1.934 r_mcangle_it 1.432 r_mcbond_it 0.876 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.036 r_dihedral_angle_4_deg 16.389 r_dihedral_angle_3_deg 15.67 r_dihedral_angle_1_deg 7 r_scangle_it 3.436 r_scbond_it 2.28 r_angle_refined_deg 1.934 r_mcangle_it 1.432 r_mcbond_it 0.876 r_nbtor_refined 0.31 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.201 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.119 r_metal_ion_refined 0.114 r_symmetry_metal_ion_refined 0.062 r_symmetry_hbond_refined 0.035 r_bond_refined_d 0.02 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3259 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 84
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction