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Crystal Structure of S. pombe Brc1 BRCT5-BRCT6 domains
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 295 20-22% w/v PEG 3350, 100 mM NaCl, 100 mM K2HPO4/KH2PO4 pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.22 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.472 α = 90 b = 83.425 β = 90 c = 87.246 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-03-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 12.3.1 1.111, 0.9796, 0.9797, 1.0087 ALS 12.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 94.8 0.045 38.6 6.9 61324 61324
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.61 67 0.502 2.2 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.55 50 58154 58154 3109 94.7 0.181 0.179 0.1786 0.225 0.2232 RANDOM 28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.91 -1.32 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.896 r_dihedral_angle_4_deg 16.901 r_dihedral_angle_3_deg 14.983 r_sphericity_free 8.558 r_dihedral_angle_1_deg 6.125 r_scbond_it 6.024 r_rigid_bond_restr 5.901 r_scangle_it 5.715 r_sphericity_bonded 5.386 r_mcangle_it 2.758
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.896 r_dihedral_angle_4_deg 16.901 r_dihedral_angle_3_deg 14.983 r_sphericity_free 8.558 r_dihedral_angle_1_deg 6.125 r_scbond_it 6.024 r_rigid_bond_restr 5.901 r_scangle_it 5.715 r_sphericity_bonded 5.386 r_mcangle_it 2.758 r_mcbond_it 1.973 r_angle_refined_deg 1.785 r_nbtor_refined 0.312 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.199 r_symmetry_hbond_refined 0.194 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.122 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3368 Nucleic Acid Atoms Solvent Atoms 399 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling