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Crystal structure of Beta 2 Microglobulin amyloidogenic segment LSFSKD
Crystallization Crystal Properties Matthews coefficient Solvent content 1.66 25.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 9.425 α = 90 b = 21.482 β = 90.02 c = 45.731 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97910 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 80 93.7 0.118 8.3 3.8 1656
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 82 0.501 3.7 150
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 22.86 1499 175 95.99 0.219 0.216 0.2252 0.241 0.2577 RANDOM 16.931
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.25 0.05 4.13 -1.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.297 r_dihedral_angle_3_deg 12.992 r_dihedral_angle_1_deg 5.188 r_scangle_it 3.404 r_scbond_it 2.609 r_mcangle_it 2.044 r_mcbond_it 1.002 r_angle_refined_deg 0.979 r_angle_other_deg 0.659 r_mcbond_other 0.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.297 r_dihedral_angle_3_deg 12.992 r_dihedral_angle_1_deg 5.188 r_scangle_it 3.404 r_scbond_it 2.609 r_mcangle_it 2.044 r_mcbond_it 1.002 r_angle_refined_deg 0.979 r_angle_other_deg 0.659 r_mcbond_other 0.272 r_chiral_restr 0.066 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 196 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling