☰ Navigation Tabs
Structure of the 14-3-3/PMA2 complex stabilized by Pyrrolidone1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YZ5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 277.15 0.1M CHES, 1.0M Na-Citrat, 30%(w/v) sucrose, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 4.13 70.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.44 α = 90 b = 97.44 β = 90 c = 214.27 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00749 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 48.74 99.9 0.061 22.39 8499 -3 85.969
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.5 99.9 0.47 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1YZ5 3.25 48.74 8496 425 100 0.312 0.31 0.3076 0.34 0.3322 RANDOM 98.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.65 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.599 r_dihedral_angle_3_deg 14.548 r_dihedral_angle_4_deg 14.066 r_dihedral_angle_1_deg 3.485 r_angle_refined_deg 0.646 r_mcangle_it 0.44 r_scangle_it 0.325 r_mcbond_it 0.244 r_scbond_it 0.178 r_chiral_restr 0.043
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.599 r_dihedral_angle_3_deg 14.548 r_dihedral_angle_4_deg 14.066 r_dihedral_angle_1_deg 3.485 r_angle_refined_deg 0.646 r_mcangle_it 0.44 r_scangle_it 0.325 r_mcbond_it 0.244 r_scbond_it 0.178 r_chiral_restr 0.043 r_bond_refined_d 0.002 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2002 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 34
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling