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Crystal structure of a PSPTO_0244 (Protein with unknown function which belongs to Pfam DUF861 family) from Pseudomonas syringae pv. tomato str. DC3000 at 1.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.3 277 0.2000M NH4Cl, 20.0000% PEG-3350, No Buffer pH 6.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.07 40.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.584 α = 90 b = 48.396 β = 108.21 c = 80.454 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-12-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97913,0.97879 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 28.759 96.4 0.042 12.07 101752 -3 8.663
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 80.3 0.308 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 28.759 101735 5084 98.27 0.119 0.117 0.146 0.1506 RANDOM 13.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.06 0.34 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.822 r_dihedral_angle_4_deg 17.832 r_dihedral_angle_3_deg 11.871 r_dihedral_angle_1_deg 7.071 r_sphericity_free 5.668 r_scangle_it 4.03 r_scbond_it 2.916 r_sphericity_bonded 2.739 r_mcangle_it 2.467 r_mcbond_it 1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.822 r_dihedral_angle_4_deg 17.832 r_dihedral_angle_3_deg 11.871 r_dihedral_angle_1_deg 7.071 r_sphericity_free 5.668 r_scangle_it 4.03 r_scbond_it 2.916 r_sphericity_bonded 2.739 r_mcangle_it 2.467 r_mcbond_it 1.68 r_angle_refined_deg 1.495 r_rigid_bond_restr 1.224 r_mcbond_other 0.971 r_angle_other_deg 0.85 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3504 Nucleic Acid Atoms Solvent Atoms 791 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction