X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5291PEG 8000, Ca acetate, pH 7.5, vapor diffusion, hanging drop, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.8861.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.999α = 90
b = 114.686β = 101.96
c = 86.019γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002010-03-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.12099.90.0849.34.492214
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.141000.5224.44637

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.119.8991667457699.940.2070.2050.242RANDOM34.661
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.96-0.74-2.090.83
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.856
r_dihedral_angle_4_deg16.263
r_dihedral_angle_3_deg14.931
r_dihedral_angle_1_deg5.346
r_scangle_it3.066
r_scbond_it1.83
r_mcangle_it1.286
r_angle_refined_deg1.243
r_mcbond_it0.666
r_chiral_restr0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.856
r_dihedral_angle_4_deg16.263
r_dihedral_angle_3_deg14.931
r_dihedral_angle_1_deg5.346
r_scangle_it3.066
r_scbond_it1.83
r_mcangle_it1.286
r_angle_refined_deg1.243
r_mcbond_it0.666
r_chiral_restr0.09
r_bond_refined_d0.01
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8792
Nucleic Acid Atoms
Solvent Atoms505
Heterogen Atoms150

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction