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V30M mutant human transthyretin (TTR) complexed with GC-24 (V30M:GC-24)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.2 M CaCl2, 0.1 M HEPES pH 7.5, 28% PEG 400, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.76 α = 90 b = 85.4 β = 90 c = 64.32 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.43016 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 64.32 99.9 0.074 14.6 7 29737 29737
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.74 100 0.407 0.407 1.9 6.9 4280
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 22.15 27154 1449 99.74 0.164 0.162 0.1609 0.207 0.207 RANDOM 20.751
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.35 r_dihedral_angle_4_deg 18.439 r_dihedral_angle_3_deg 12.612 r_dihedral_angle_1_deg 6.208 r_scangle_it 4.47 r_scbond_it 2.969 r_mcangle_it 2.315 r_rigid_bond_restr 1.551 r_angle_refined_deg 1.425 r_mcbond_it 1.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.35 r_dihedral_angle_4_deg 18.439 r_dihedral_angle_3_deg 12.612 r_dihedral_angle_1_deg 6.208 r_scangle_it 4.47 r_scbond_it 2.969 r_mcangle_it 2.315 r_rigid_bond_restr 1.551 r_angle_refined_deg 1.425 r_mcbond_it 1.345 r_chiral_restr 0.1 r_bond_refined_d 0.013 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1794 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 68
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection