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Crystal Structure of CUGBP1 RRM1/2-RNA Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 0.2 M ammonium acetate, 45% MPD, 0.1 M Tris pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 46.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.367 α = 90 b = 70.061 β = 90 c = 131.706 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-09-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97920, 0.97880, 0.96360 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.899 50 99.8 0.042 36.3 3.8 33331 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.899 1.97 99.9 0.366 3.7 3.8 3325
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.899 20 33331 16774 897 99.67 0.20936 0.20936 0.20741 0.2099 0.24775 0.2484 RANDOM 30.591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 -0.36 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.291 r_dihedral_angle_4_deg 20.777 r_dihedral_angle_3_deg 15.542 r_dihedral_angle_1_deg 10.911 r_sphericity_free 5.218 r_scangle_it 3.824 r_scbond_it 2.509 r_sphericity_bonded 1.887 r_mcangle_it 1.615 r_angle_refined_deg 1.268
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.291 r_dihedral_angle_4_deg 20.777 r_dihedral_angle_3_deg 15.542 r_dihedral_angle_1_deg 10.911 r_sphericity_free 5.218 r_scangle_it 3.824 r_scbond_it 2.509 r_sphericity_bonded 1.887 r_mcangle_it 1.615 r_angle_refined_deg 1.268 r_rigid_bond_restr 1.205 r_mcbond_it 0.922 r_angle_other_deg 0.666 r_mcbond_other 0.307 r_chiral_restr 0.092 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1375 Nucleic Acid Atoms 103 Solvent Atoms 91 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling