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Crystal structure of S. typhimurium H-NS 1-83
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OV9 PDB entry 1OV9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 6.2 290 20 % (v/v) MPD, 20 mM phenol, 100 mM MES, pH 6.2, MICRODIALYSIS, temperature 290K
Crystal Properties Matthews coefficient Solvent content 6.9 82.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.397 α = 90 b = 130.397 β = 90 c = 55.061 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 IMAGE PLATE RIGAKU RAXIS IV osmic mirrors 2006-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 32.6 96.9 0.1 6.7 2.7 5676 5676 150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.7 3.83 96.4 0.44 1.8 2.49 583
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1OV9 3.7 32.6 5676 5676 427 96.73 0.27366 0.27366 0.27107 0.2768 0.30375 0.3016 RANDOM 189.256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.23 2.62 5.23 -7.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.592 r_dihedral_angle_3_deg 26.13 r_dihedral_angle_4_deg 21.975 r_dihedral_angle_1_deg 5.953 r_scangle_it 1.85 r_angle_refined_deg 1.551 r_scbond_it 0.984 r_mcangle_it 0.733 r_mcbond_it 0.377 r_chiral_restr 0.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.592 r_dihedral_angle_3_deg 26.13 r_dihedral_angle_4_deg 21.975 r_dihedral_angle_1_deg 5.953 r_scangle_it 1.85 r_angle_refined_deg 1.551 r_scbond_it 0.984 r_mcangle_it 0.733 r_mcbond_it 0.377 r_chiral_restr 0.115 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1288 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement d*TREK data reduction d*TREK data scaling