Experiment: 3NVH

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	298	100mM HEPES ph 7.0, 10% PEG 1200, vapor diffusion, hanging drop, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
1.38	10.61

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 30.28	α = 90
b = 4.873	β = 90
c = 31.107	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MAR CCD 165		2005-12-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID13	0.9466	ESRF	ID13

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.61	90	97.3	0.206	7	6.3		714

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.61	1.71	88.7		0.28		2.7	55

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.61	21.7	696	72	94.18	0.169	0.1659	0.1972	RANDOM	12.4124

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.48			-0.63		1.12

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.995
r_dihedral_angle_3_deg	11.468
r_dihedral_angle_1_deg	7.78
r_scangle_it	2.114
r_scbond_it	1.535
r_mcangle_it	1.469
r_angle_refined_deg	1.297
r_mcbond_it	0.827
r_angle_other_deg	0.609
r_mcbond_other	0.204

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.995
r_dihedral_angle_3_deg	11.468
r_dihedral_angle_1_deg	7.78
r_scangle_it	2.114
r_scbond_it	1.535
r_mcangle_it	1.469
r_angle_refined_deg	1.297
r_mcbond_it	0.827
r_angle_other_deg	0.609
r_mcbond_other	0.204
r_chiral_restr	0.088
r_bond_refined_d	0.009
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	58
Nucleic Acid Atoms
Solvent Atoms	3
Heterogen Atoms	7

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.