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Structure of OkrAI/DNA complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 298 15-17% PEG 8000, 0.2 M calcium acetate, 0.1 M sodium cacodylate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.97 37.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.982 α = 90 b = 83.075 β = 90 c = 119.67 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 30786
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 20 32438 30786 1624 88.83 0.15934 0.15533 0.1539 0.23374 0.2311 RANDOM 17.335
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.49 0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.954 r_dihedral_angle_4_deg 22.159 r_dihedral_angle_3_deg 16.808 r_dihedral_angle_1_deg 7.295 r_scangle_it 3.297 r_scbond_it 2.259 r_angle_refined_deg 1.871 r_mcangle_it 1.502 r_mcbond_it 0.835 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.954 r_dihedral_angle_4_deg 22.159 r_dihedral_angle_3_deg 16.808 r_dihedral_angle_1_deg 7.295 r_scangle_it 3.297 r_scbond_it 2.259 r_angle_refined_deg 1.871 r_mcangle_it 1.502 r_mcbond_it 0.835 r_chiral_restr 0.11 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6007 Nucleic Acid Atoms 972 Solvent Atoms 710 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement CNS refinement DENZO data reduction HKL-2000 data scaling CNS phasing