X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
127723.6% PEG MME 2000, 100 mM Bicine, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.8556.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.771α = 90
b = 122.557β = 115
c = 144.737γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray92CCDADSC QUANTUM 315r2007-03-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.3ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.725097.50.11484.1100745
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.722.7782.70.593.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.723510316195647503897.50.197490.194560.25447RANDOM43.799
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.53-0.15-0.12-0.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.889
r_dihedral_angle_4_deg17.476
r_dihedral_angle_3_deg16.362
r_dihedral_angle_1_deg6.647
r_scangle_it1.374
r_angle_refined_deg1.217
r_scbond_it0.847
r_angle_other_deg0.844
r_mcangle_it0.556
r_mcbond_it0.292
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.889
r_dihedral_angle_4_deg17.476
r_dihedral_angle_3_deg16.362
r_dihedral_angle_1_deg6.647
r_scangle_it1.374
r_angle_refined_deg1.217
r_scbond_it0.847
r_angle_other_deg0.844
r_mcangle_it0.556
r_mcbond_it0.292
r_symmetry_vdw_other0.206
r_symmetry_hbond_refined0.182
r_symmetry_vdw_refined0.171
r_xyhbond_nbd_refined0.154
r_chiral_restr0.071
r_xyhbond_nbd_other0.055
r_mcbond_other0.053
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms23857
Nucleic Acid Atoms
Solvent Atoms506
Heterogen Atoms350

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction