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Polo-like kinase I Polo-box domain in complex with PLHSpTA phosphopeptide from PBIP1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UMW 1UMW (chain A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M K/Na tartrate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.83 32.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.412 α = 90 b = 66.863 β = 94.12 c = 43.427 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2010-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9334 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 43.31 99.6 18437 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UMW (chain A) 1.79 43.31 17491 945 99.56 0.20482 0.20252 0.20252 0.2127 0.24974 0.2594 RANDOM 19.961
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.942 r_dihedral_angle_4_deg 16.528 r_dihedral_angle_3_deg 13.18 r_dihedral_angle_1_deg 5.095 r_scangle_it 1.451 r_angle_refined_deg 0.933 r_scbond_it 0.854 r_mcangle_it 0.646 r_mcbond_it 0.333 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.942 r_dihedral_angle_4_deg 16.528 r_dihedral_angle_3_deg 13.18 r_dihedral_angle_1_deg 5.095 r_scangle_it 1.451 r_angle_refined_deg 0.933 r_scbond_it 0.854 r_mcangle_it 0.646 r_mcbond_it 0.333 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1735 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 6
Software Software Software Name Purpose MOLREP phasing REFMAC refinement