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Crystal structure of a Putative dehydrogenase (RPA1076) from Rhodopseudomonas palustris CGA009 at 2.57 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.60M potassium dihydrogen phosphate, 25.00% Glycerol, 0.60M sodium dihydrogen phosphate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.75 67.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.085 α = 90 b = 250.728 β = 90 c = 251.711 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2010-06-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97922,0.97894 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 49.357 98.9 0.114 10.26 144716 -3 52.656
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.57 2.66 99.9 0.824 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.57 49.357 144702 7270 98.91 0.1948 0.1931 0.1903 0.2266 0.2204 RANDOM 39.0054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 -0.79 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.66 r_dihedral_angle_4_deg 13.344 r_dihedral_angle_3_deg 10.123 r_dihedral_angle_1_deg 2.761 r_scangle_it 2.009 r_angle_refined_deg 1.299 r_scbond_it 1.118 r_angle_other_deg 0.88 r_mcangle_it 0.865 r_mcbond_it 0.445
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.66 r_dihedral_angle_4_deg 13.344 r_dihedral_angle_3_deg 10.123 r_dihedral_angle_1_deg 2.761 r_scangle_it 2.009 r_angle_refined_deg 1.299 r_scbond_it 1.118 r_angle_other_deg 0.88 r_mcangle_it 0.865 r_mcbond_it 0.445 r_chiral_restr 0.071 r_mcbond_other 0.058 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20838 Nucleic Acid Atoms Solvent Atoms 919 Heterogen Atoms 444
Software Software Software Name Purpose SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing