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The crystal structure of human abl1 kinase domain T315I mutant in complex with DCC-2036
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Abl kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.1 290 29% PEG 3350, 100MM BISTRIS PH 7.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K
Crystal Properties Matthews coefficient Solvent content 1.84 33.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.261 α = 90 b = 59.435 β = 109.55 c = 76.285 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 20 96.5 0.087 16.1 43355 41838 20
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.89 80.4 0.408 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Abl kinase 1.82 19.59 43355 40360 2035 0.232 0.232 0.229 0.2324 0.286 0.287 RANDOM 16.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.02 0.11 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.157 r_dihedral_angle_4_deg 17.169 r_dihedral_angle_3_deg 15.626 r_dihedral_angle_1_deg 7.022 r_scangle_it 3.351 r_scbond_it 2.248 r_angle_refined_deg 1.724 r_mcangle_it 1.463 r_angle_other_deg 0.978 r_mcbond_it 0.864
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.157 r_dihedral_angle_4_deg 17.169 r_dihedral_angle_3_deg 15.626 r_dihedral_angle_1_deg 7.022 r_scangle_it 3.351 r_scbond_it 2.248 r_angle_refined_deg 1.724 r_mcangle_it 1.463 r_angle_other_deg 0.978 r_mcbond_it 0.864 r_mcbond_other 0.233 r_chiral_restr 0.092 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4128 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 82
Software Software Software Name Purpose BOS data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling