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Mouse C-type lectin-related protein Clrg
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HUP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 spontaneous crystallization 7.5 293 spontaneous crystallization on tube wall; buffer: 10 mM HEPES, pH 7.5, 100 mM NaCl and 1 mM NaN3, 2.3 mg/ml, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.31 α = 90 b = 61.38 β = 90 c = 32.36 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 96 0.08 10.4 5.6 18158 17372 -1000 -1000 18.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 90 0.306 4.5 4.6 891
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3HUP 1.94 28.39 -1000 17346 16459 95.59 0.18641 0.18641 0.18463 0.1933 0.2039 random 14.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 1.93 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.553 r_dihedral_angle_3_deg 14.581 r_dihedral_angle_4_deg 14.346 r_dihedral_angle_1_deg 7.299 r_scangle_it 3.366 r_scbond_it 2.164 r_mcangle_it 1.444 r_angle_refined_deg 1.336 r_angle_other_deg 0.861 r_mcbond_it 0.797
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.553 r_dihedral_angle_3_deg 14.581 r_dihedral_angle_4_deg 14.346 r_dihedral_angle_1_deg 7.299 r_scangle_it 3.366 r_scbond_it 2.164 r_mcangle_it 1.444 r_angle_refined_deg 1.336 r_angle_other_deg 0.861 r_mcbond_it 0.797 r_mcbond_other 0.194 r_chiral_restr 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 1
Software Software Software Name Purpose MxCuBE data collection BALBES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling