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Fic protein from NEISSERIA MENINGITIDIS in complex with AMPPNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G03 PDB entry 2g03
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 5% 2-propanol, 0.1M MES, 0.1M Ca-acetate, pH 6.0, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 5.8 78.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.96 α = 90 b = 148.96 β = 90 c = 75.799 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 65.35 99.11 0.093 18.5111 13.65 27218 27218 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 93.93 0.47 1.6 8.81 3678
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 2g03 2.2 15 25536 25536 1290 99.96 0.19 0.19 0.188 0.1899 0.213 0.2127 RANDOM 38.518
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.57 -1.78 -3.57 5.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.284 r_dihedral_angle_4_deg 19.316 r_dihedral_angle_3_deg 14.195 r_scangle_it 5.971 r_dihedral_angle_1_deg 5.206 r_scbond_it 3.712 r_mcangle_it 2.259 r_angle_refined_deg 1.244 r_mcbond_it 1.175 r_angle_other_deg 0.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.284 r_dihedral_angle_4_deg 19.316 r_dihedral_angle_3_deg 14.195 r_scangle_it 5.971 r_dihedral_angle_1_deg 5.206 r_scbond_it 3.712 r_mcangle_it 2.259 r_angle_refined_deg 1.244 r_mcbond_it 1.175 r_angle_other_deg 0.833 r_mcbond_other 0.297 r_chiral_restr 0.074 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1465 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 27
Software Software Software Name Purpose SCALA data scaling MOSFLM data reduction FFT phasing REFMAC refinement