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Fic protein from NEISSERIA MENINGITIDIS mutant delta8 in complex with AMPPNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G03 PDB entry 2g03
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 44% w/v PEG 600, 0.1M Na-citrate, pH 5.6, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.27 45.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.945 α = 90 b = 65.031 β = 107.08 c = 75.995 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 37.03 97.69 0.069 9.8144 4 73865 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 95.43 0.37 1.97 3.46 10470
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2g03 1.7 15 73329 3696 97.29 0.16 0.159 0.169 0.197 0.206 RANDOM 19.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.4 -0.26 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.244 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_3_deg 12.658 r_scangle_it 7.391 r_dihedral_angle_1_deg 4.97 r_scbond_it 4.644 r_mcangle_it 3.133 r_mcbond_it 1.965 r_angle_refined_deg 1.317 r_angle_other_deg 0.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.244 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_3_deg 12.658 r_scangle_it 7.391 r_dihedral_angle_1_deg 4.97 r_scbond_it 4.644 r_mcangle_it 3.133 r_mcbond_it 1.965 r_angle_refined_deg 1.317 r_angle_other_deg 0.877 r_mcbond_other 0.717 r_chiral_restr 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5068 Nucleic Acid Atoms Solvent Atoms 424 Heterogen Atoms 204
Software Software Software Name Purpose SCALA data scaling MOSFLM data reduction PHASER phasing REFMAC refinement