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Fic protein from NEISSERIA MENINGITIDIS mutant S182A/E186A in complex with AMPPNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G03 PDB entry 2g03
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 21% PEG3350, 0.2 M di-ammonium tartrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.42 49.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.313 α = 90 b = 136.919 β = 100.26 c = 114.663 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.02 87.07 88.96 0.112 6.9449 3.8 58488 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.02 3.19 43.15 0.35 2.17 2.06 4120
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2g03 3.03 15 57892 2943 89.92 0.222 0.222 0.2279 0.248 0.2484 RANDOM 65.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.75 1.96 -1.2 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.428 r_dihedral_angle_4_deg 15.971 r_dihedral_angle_3_deg 13.491 r_dihedral_angle_1_deg 4.783 r_scangle_it 2.965 r_scbond_it 1.638 r_angle_refined_deg 1.114 r_mcangle_it 0.95 r_angle_other_deg 0.789 r_mcbond_it 0.425
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.428 r_dihedral_angle_4_deg 15.971 r_dihedral_angle_3_deg 13.491 r_dihedral_angle_1_deg 4.783 r_scangle_it 2.965 r_scbond_it 1.638 r_angle_refined_deg 1.114 r_mcangle_it 0.95 r_angle_other_deg 0.789 r_mcbond_it 0.425 r_mcbond_other 0.061 r_chiral_restr 0.056 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20624 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 496
Software Software Software Name Purpose SCALA data scaling MOSFLM data reduction PHASER phasing REFMAC refinement