☰ Navigation Tabs
IspH:HMBPP complex after 3 minutes X-ray pre-exposure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F7T PDB ENTRY 3F7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 200 mM lithium sulfate, 25% PEG3350, 100 mM Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.19 43.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.89 α = 90 b = 80.58 β = 90 c = 111.09 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 91.8 0.06 12.5 84534 77603 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 95.6 0.408 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3F7T 1.6 10 77453 73426 3865 100 0.20673 0.20501 0.222 0.23903 0.2467 RANDOM 12.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -1.68 2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.695 r_dihedral_angle_4_deg 21.028 r_dihedral_angle_3_deg 13.877 r_scangle_it 5.238 r_scbond_it 3.943 r_dihedral_angle_1_deg 3.699 r_rigid_bond_restr 2.807 r_mcangle_it 2.553 r_chiral_restr 2.094 r_mcbond_it 1.875
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.695 r_dihedral_angle_4_deg 21.028 r_dihedral_angle_3_deg 13.877 r_scangle_it 5.238 r_scbond_it 3.943 r_dihedral_angle_1_deg 3.699 r_rigid_bond_restr 2.807 r_mcangle_it 2.553 r_chiral_restr 2.094 r_mcbond_it 1.875 r_angle_refined_deg 1.65 r_bond_refined_d 0.022 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4773 Nucleic Acid Atoms Solvent Atoms 603 Heterogen Atoms 46
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing