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The type I crystal structure of Streptococcus agalactiae sortase C1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 277 20% PEG3350, 0.2 M Tris, 0.2 M ammonium acetate, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.59 α = 90 b = 46.93 β = 114.99 c = 66.57 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 0.9748 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 60.34 100 0.04 33.5 7.2 8228 8218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.5 100 0.125 13.1 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.45 27.15 7834 381 99.88 0.23173 0.22815 0.2166 0.30777 0.292 RANDOM 31.762
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -0.3 0.78 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.982 r_dihedral_angle_4_deg 20.651 r_dihedral_angle_3_deg 19.132 r_dihedral_angle_1_deg 7.074 r_scangle_it 4.59 r_scbond_it 2.793 r_angle_refined_deg 2.134 r_mcangle_it 1.782 r_mcbond_it 0.942 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.982 r_dihedral_angle_4_deg 20.651 r_dihedral_angle_3_deg 19.132 r_dihedral_angle_1_deg 7.074 r_scangle_it 4.59 r_scbond_it 2.793 r_angle_refined_deg 2.134 r_mcangle_it 1.782 r_mcbond_it 0.942 r_chiral_restr 0.1 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1448 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SGXPRO model building SOLVE phasing CNS refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SGXPRO phasing