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GAP50 the anchor in the inner membrane complex of Plasmodium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WAR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6 295 0.2 M (NH4)2SO4, 0.1 M sodium acetate pH 6.0, 3% DMSO or 3 % ethanol, 40% PEG8000, EVAPORATION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.62 53.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.648 α = 90 b = 57.648 β = 90 c = 210.625 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.9794 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 97.3 0.089 18.7 5.2 43472 43472 -3 -0.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 100 0.742 2.08 4.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WAR 1.7 19.44 45825 43471 2328 100 0.17454 0.17324 0.1858 0.19874 0.2129 RANDOM 35.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.888 r_dihedral_angle_3_deg 12.581 r_dihedral_angle_4_deg 12.221 r_dihedral_angle_1_deg 5.304 r_scangle_it 4.731 r_scbond_it 2.994 r_mcangle_it 2.688 r_mcbond_it 1.555 r_angle_refined_deg 1.022 r_angle_other_deg 0.773
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.888 r_dihedral_angle_3_deg 12.581 r_dihedral_angle_4_deg 12.221 r_dihedral_angle_1_deg 5.304 r_scangle_it 4.731 r_scbond_it 2.994 r_mcangle_it 2.688 r_mcbond_it 1.555 r_angle_refined_deg 1.022 r_angle_other_deg 0.773 r_mcbond_other 0.434 r_symmetry_hbond_refined 0.27 r_symmetry_vdw_other 0.187 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.067 r_symmetry_vdw_refined 0.019 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2512 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 21
Software Software Software Name Purpose XDS data scaling MOLREP phasing REFMAC refinement XSCALE data scaling