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Crystal structure of hSULT1A1 bound to PAP and 2-Naphtol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LS6 pdb entry 1LS6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 Tris, Polyethylene glycol 3.350, pH 8.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.176 α = 90 b = 81.273 β = 90 c = 121.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2009-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 22 94.8 0.089 11.1 5.5 28872
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.4 57.4 0.462 3.8 872
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1LS6 2.36 22 28688 1456 95.26 0.217 0.2142 0.2116 0.2705 0.2622 RANDOM 44.1194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.46 4.22 -1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.949 r_dihedral_angle_4_deg 22.026 r_dihedral_angle_3_deg 17.714 r_dihedral_angle_1_deg 6.383 r_scangle_it 3.411 r_scbond_it 2.263 r_angle_refined_deg 1.675 r_mcangle_it 1.484 r_angle_other_deg 0.956 r_mcbond_it 0.806
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.949 r_dihedral_angle_4_deg 22.026 r_dihedral_angle_3_deg 17.714 r_dihedral_angle_1_deg 6.383 r_scangle_it 3.411 r_scbond_it 2.263 r_angle_refined_deg 1.675 r_mcangle_it 1.484 r_angle_other_deg 0.956 r_mcbond_it 0.806 r_mcbond_other 0.177 r_chiral_restr 0.093 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4709 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 76
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction