☰ Navigation Tabs
Iodide derivative of human LFABP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8 293 30% PEG MME 2000, 0.15M KBr, pH 8.0, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.979 α = 90 b = 57.781 β = 90 c = 74.862 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2009-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 50 99.5 0.103 8 5.6 6640 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.3 96.6 0.392 4.9 621
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 8 5106 497 99.88 0.2165 0.2065 0.2103 0.3122 0.3041 RANDOM 23.3338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 -0.95 2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.608 r_dihedral_angle_3_deg 17.077 r_dihedral_angle_4_deg 12.834 r_dihedral_angle_1_deg 6.326 r_scangle_it 2.647 r_scbond_it 1.622 r_angle_refined_deg 1.369 r_mcangle_it 0.937 r_mcbond_it 0.538 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.608 r_dihedral_angle_3_deg 17.077 r_dihedral_angle_4_deg 12.834 r_dihedral_angle_1_deg 6.326 r_scangle_it 2.647 r_scbond_it 1.622 r_angle_refined_deg 1.369 r_mcangle_it 0.937 r_mcbond_it 0.538 r_nbtor_refined 0.303 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.185 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 999 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 41
Software Software Software Name Purpose SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling