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Cadmium derivative of human LFABP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8 293 30% PEG MME 2000, 0.15M KBr, pH 8.0, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.16 43.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.147 α = 90 b = 57.246 β = 90 c = 73.213 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2009-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 50 98.9 0.068 16 13 6719 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.29 89.2 0.37 9.4 579
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.22 8 6491 820 99.74 0.2408 0.2329 0.2338 0.3002 0.2801 RANDOM 46.0671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.53 -2.64 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.304 r_dihedral_angle_3_deg 17.556 r_dihedral_angle_1_deg 6.899 r_dihedral_angle_4_deg 2.894 r_scangle_it 2.724 r_scbond_it 1.692 r_angle_refined_deg 1.39 r_mcangle_it 1.265 r_mcbond_it 0.726 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.304 r_dihedral_angle_3_deg 17.556 r_dihedral_angle_1_deg 6.899 r_dihedral_angle_4_deg 2.894 r_scangle_it 2.724 r_scbond_it 1.692 r_angle_refined_deg 1.39 r_mcangle_it 1.265 r_mcbond_it 0.726 r_nbtor_refined 0.305 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.129 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 994 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 38
Software Software Software Name Purpose SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling