☰ Navigation Tabs
Crystal structure analysis of Cyanidioschyzon melorae ferredoxin D58N mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 1.5M ammonium sulfate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.026 α = 90 b = 46.527 β = 90 c = 66.139 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.97 50 96.1 0.604 0.066 12.53 57345 57345 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 0.97 26.97 57345 57345 3081 96.07 0.1517 0.1517 0.15073 0.17003 0.1744 RANDOM 12.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.1 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.045 r_sphericity_free 32.538 r_dihedral_angle_3_deg 12.015 r_sphericity_bonded 11.827 r_dihedral_angle_4_deg 9.3 r_dihedral_angle_1_deg 7.943 r_rigid_bond_restr 7.875 r_angle_refined_deg 2.445 r_angle_other_deg 1.234 r_chiral_restr 0.162
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.045 r_sphericity_free 32.538 r_dihedral_angle_3_deg 12.015 r_sphericity_bonded 11.827 r_dihedral_angle_4_deg 9.3 r_dihedral_angle_1_deg 7.943 r_rigid_bond_restr 7.875 r_angle_refined_deg 2.445 r_angle_other_deg 1.234 r_chiral_restr 0.162 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 736 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 4
Software Software Software Name Purpose CrystalClear data collection CRANK phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling