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Structure of hyperthermophilic family 12 endocellulase mutant from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 303 0.14M CHES, 0.5M potassium sodium tartrate, 0.1M lithium sulfate, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 303.0K
Crystal Properties Matthews coefficient Solvent content 2.23 44.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.96 α = 90 b = 118.27 β = 90 c = 46.69 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2011-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 16.2 91.2 0.101 15.7 12.6 101529 101529
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.22 88.5 0.388 0.388 0.11 1.9 12.9 14243
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.16 16.2 101470 5082 90.82 0.1261 0.1245 0.1248 0.1561 0.1568 RANDOM 14.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.16 -0.44
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.937 r_dihedral_angle_2_deg 34.641 r_dihedral_angle_4_deg 20.567 r_sphericity_bonded 13.788 r_dihedral_angle_3_deg 10.774 r_rigid_bond_restr 9.279 r_dihedral_angle_1_deg 7.372 r_angle_refined_deg 2.344 r_chiral_restr 0.205 r_bond_refined_d 0.024
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.937 r_dihedral_angle_2_deg 34.641 r_dihedral_angle_4_deg 20.567 r_sphericity_bonded 13.788 r_dihedral_angle_3_deg 10.774 r_rigid_bond_restr 9.279 r_dihedral_angle_1_deg 7.372 r_angle_refined_deg 2.344 r_chiral_restr 0.205 r_bond_refined_d 0.024 r_gen_planes_refined 0.017
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2163 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 46
Software Software Software Name Purpose DENZO data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection MOSFLM data reduction