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Engineered 12-subunit Bacillus stearothermophilus trp RNA-binding attenuation protein (TRAP)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QAW PDB ENTRY 1QAW
Crystallization Crystal Properties Matthews coefficient Solvent content 2.71 54.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.203 α = 90 b = 110.203 β = 90 c = 128.304 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 25 99.9 0.05 31.5 4.9 124338 2 16.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.73 100 0.48 2.7 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QAW 1.49 25 123011 1250 99.82 0.14713 0.14678 0.1554 0.18228 0.1883 RANDOM 14.058
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.21 0.42
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.589 r_dihedral_angle_2_deg 30.428 r_dihedral_angle_4_deg 15.992 r_dihedral_angle_3_deg 10.648 r_sphericity_bonded 10.206 r_dihedral_angle_1_deg 6.981 r_rigid_bond_restr 1.227 r_angle_refined_deg 1.075 r_angle_other_deg 0.932 r_chiral_restr 0.05
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.589 r_dihedral_angle_2_deg 30.428 r_dihedral_angle_4_deg 15.992 r_dihedral_angle_3_deg 10.648 r_sphericity_bonded 10.206 r_dihedral_angle_1_deg 6.981 r_rigid_bond_restr 1.227 r_angle_refined_deg 1.075 r_angle_other_deg 0.932 r_chiral_restr 0.05 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4581 Nucleic Acid Atoms Solvent Atoms 978 Heterogen Atoms 135
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing