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Crystal structure of a DARPin in complex with ORF49 from Lactococcal phage TP901-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JAB 2JAB AND 2FOC experimental model PDB 2FOC 2JAB AND 2FOC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 293 40 mM Tris, 20 mM Bis-Tris-Propane, 25% PEG 2000 MME, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.65 α = 90 b = 80.44 β = 90 c = 182.87 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 19.89 97 0.065 12.43 3.58 39881 2.48 33.23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.3 91.8 0.5021 2.48 3.67
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2JAB AND 2FOC 2.1 19.89 1.99 39860 997 97 0.209 0.208 0.2048 0.243 0.2396 50.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.138 9.688 -1.549
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.836 f_angle_d 1.676 f_chiral_restr 0.136 f_bond_d 0.014 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3881 Nucleic Acid Atoms Solvent Atoms 446 Heterogen Atoms
Software Software Software Name Purpose MxCuBE data collection AMoRE phasing PHENIX refinement XDS data reduction XSCALE data scaling