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Glutathione-inhibited ScGCL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IG5 PDB entry 3IG5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 291 100mM Hepes, pH 6.8, 14-20% PEG 400, 5mM GSH, 5mM MgCl2 , VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.62 66.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.127 α = 90 b = 118.127 β = 90 c = 165.799 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Osmic Blue 2008-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 97.1 0.101 9.7 8.77 40046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 96.1 0.533 3 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3IG5 2.5 19.88 37458 2000 100 0.20171 0.1991 0.196 0.25054 0.244 RANDOM 46.214
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 1.04 -2.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.511 r_dihedral_angle_4_deg 21.411 r_dihedral_angle_3_deg 17.139 r_dihedral_angle_1_deg 6.672 r_scangle_it 3.731 r_scbond_it 2.502 r_angle_refined_deg 1.926 r_mcangle_it 1.71 r_mcbond_it 1.025 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.511 r_dihedral_angle_4_deg 21.411 r_dihedral_angle_3_deg 17.139 r_dihedral_angle_1_deg 6.672 r_scangle_it 3.731 r_scbond_it 2.502 r_angle_refined_deg 1.926 r_mcangle_it 1.71 r_mcbond_it 1.025 r_nbtor_refined 0.322 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.158 r_symmetry_vdw_refined 0.147 r_chiral_restr 0.127 r_symmetry_hbond_refined 0.127 r_bond_refined_d 0.021 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5476 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 50
Software Software Software Name Purpose CrystalClear data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing