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Structure of duck RIG-I C-terminal domain (CTD) with 14-mer dSRNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A2V PDB ENTRY 4A2V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 14 MG/ML IN A 2:1 MOLAR RATIO WITH 14-MER DSRNA AND 0.1 M TRIS PH 8.8, 26% (W/V) PEG 3350.
Crystal Properties Matthews coefficient Solvent content 3.92 61.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 216.02 α = 90 b = 90.64 β = 90.38 c = 62.96 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4 50 98.4 0.12 10.3 4.47 10316
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4 4.2 94 0.8 1.9 4.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A2V 4 108.01 9821 495 99.17 0.20603 0.20394 0.2199 0.24813 0.265 RANDOM 68.041
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.25 -0.02 5.27 -2.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.849 r_dihedral_angle_3_deg 13.066 r_dihedral_angle_4_deg 8.561 r_dihedral_angle_1_deg 6.294 r_angle_refined_deg 1.131 r_angle_other_deg 0.878 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.849 r_dihedral_angle_3_deg 13.066 r_dihedral_angle_4_deg 8.561 r_dihedral_angle_1_deg 6.294 r_angle_refined_deg 1.131 r_angle_other_deg 0.878 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3964 Nucleic Acid Atoms 1182 Solvent Atoms Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing