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CpGH89CBM32-4, produced by Clostridium perfringens, in complex with glcNAc-alpha-1,4-galactose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 CBM32-4 (20 MG/ML) IN COMPLEX WITH GLCNAC-ALPHA-1,4-GAL (AT 2 MM) CRYSTALLIZED IN 0.1 M ZNOAC, 0.1 M BICINE PH 8.0, 18% PEG 3350, 4 MM CRCL
Crystal Properties Matthews coefficient Solvent content 2.03 39.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.71 α = 90 b = 49.89 β = 90 c = 63.17 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 98.7 0.15 4.2 7240 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.8 20 6859 331 97.27 0.28656 0.28505 0.2825 0.31772 0.3121 RANDOM 22.208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.09 1.08 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.382 r_dihedral_angle_3_deg 14.961 r_dihedral_angle_4_deg 13.062 r_dihedral_angle_1_deg 5.631 r_angle_refined_deg 1.053 r_chiral_restr 0.066 r_scangle_it 0.058 r_scbond_it 0.032 r_bond_refined_d 0.006 r_mcangle_it 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.382 r_dihedral_angle_3_deg 14.961 r_dihedral_angle_4_deg 13.062 r_dihedral_angle_1_deg 5.631 r_angle_refined_deg 1.053 r_chiral_restr 0.066 r_scangle_it 0.058 r_scbond_it 0.032 r_bond_refined_d 0.006 r_mcangle_it 0.005 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2194 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement