X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4ABKPDB ENTRY 4ABK

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
130% PEGMME2000, 0.05M POTASSIUM BROMIDE
Crystal Properties
Matthews coefficientSolvent content
1.935.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.705α = 90
b = 41.066β = 90
c = 108.918γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2011-01-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I02DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.153597.80.0520.96.753461
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.151.1882.70.433.94.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)R-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4ABK1.1532.795078826731000.162220.160670.210.191320.22RANDOM15.22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.27-0.81-0.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.907
r_dihedral_angle_4_deg24.282
r_dihedral_angle_3_deg12.466
r_dihedral_angle_1_deg5.836
r_scangle_it5.41
r_scbond_it3.73
r_mcangle_it2.541
r_mcbond_it1.678
r_angle_refined_deg1.589
r_rigid_bond_restr1.435
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1371
Nucleic Acid Atoms
Solvent Atoms199
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing