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Crystal structure of the reactive loop cleaved ZPI in P41 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7API PDB ENTRY 7API
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 10% 2-PROPANOL, 0.2M LI2SO4, 0.1M NAAC, PH4.5
Crystal Properties Matthews coefficient Solvent content 2.07 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.698 α = 90 b = 100.698 β = 90 c = 78.972 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 100.26 95.8 0.07 9.9 3 22072 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 82.2 0.72 1.5 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 7API 2.65 100.5 20932 1127 95.54 0.21754 0.21542 0.2184 0.25766 0.2573 RANDOM 77.299
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 1.06 -2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.463 r_dihedral_angle_4_deg 17.252 r_dihedral_angle_3_deg 15.1 r_dihedral_angle_1_deg 5.816 r_scangle_it 1.603 r_angle_refined_deg 1.021 r_scbond_it 0.908 r_angle_other_deg 0.743 r_mcangle_it 0.736 r_mcbond_it 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.463 r_dihedral_angle_4_deg 17.252 r_dihedral_angle_3_deg 15.1 r_dihedral_angle_1_deg 5.816 r_scangle_it 1.603 r_angle_refined_deg 1.021 r_scbond_it 0.908 r_angle_other_deg 0.743 r_mcangle_it 0.736 r_mcbond_it 0.38 r_chiral_restr 0.061 r_mcbond_other 0.039 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3114 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling PHASER phasing