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Native structure of a novel cold-adapted esterase from an Arctic intertidal metagenomic library
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 26-30% POLYETHYLENE GLYCOL (PEG) 3350, 3% GLYCEROL 0.1 M SODIUM MALONATE PH 7.0
Crystal Properties Matthews coefficient Solvent content 1.86 34.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.86 α = 90 b = 69.87 β = 90 c = 54.06 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 98.5 0.02 3.2 28142
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 96 0.49 2.2 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.6 25 26718 1420 98.48 0.18877 0.18715 0.1846 0.21947 0.2178 RANDOM 31.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -0.59 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.453 r_dihedral_angle_3_deg 12.921 r_dihedral_angle_4_deg 10.113 r_dihedral_angle_1_deg 5.178 r_scangle_it 2.872 r_scbond_it 1.821 r_mcangle_it 1.415 r_angle_refined_deg 1.368 r_mcbond_it 0.803 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.453 r_dihedral_angle_3_deg 12.921 r_dihedral_angle_4_deg 10.113 r_dihedral_angle_1_deg 5.178 r_scangle_it 2.872 r_scbond_it 1.821 r_mcangle_it 1.415 r_angle_refined_deg 1.368 r_mcbond_it 0.803 r_chiral_restr 0.095 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1697 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data scaling SCALA data scaling