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CRYSTAL STRUCTURE OF THE CALCIUM BOUND PKD-like DOMAIN OF COLLAGENASE G FROM CLOSTRIDIUM HISTOLYTICUM AT 0.99 ANGSTROM RESOLUTION.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y72 PDB ENTRY 2Y72
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1 M POTASSIUM THIOCYANATE, 30% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000
Crystal Properties Matthews coefficient Solvent content 1.79 31.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 19.753 α = 90 b = 70.896 β = 95.24 c = 23.379 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.99 35.4 91.8 0.02 27.3 3.4 32608 12.1 5.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.99 1.04 77.1 0.06 12.1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2Y72 0.99 35.45 30951 1623 91.57 0.12515 0.12386 0.131 0.14998 0.1611 RANDOM 8.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.13 -0.45 0.59
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.681 r_dihedral_angle_2_deg 36.221 r_dihedral_angle_3_deg 9.293 r_dihedral_angle_4_deg 7.053 r_dihedral_angle_1_deg 6.902 r_sphericity_bonded 5.284 r_rigid_bond_restr 2.311 r_angle_refined_deg 1.545 r_angle_other_deg 0.802 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.681 r_dihedral_angle_2_deg 36.221 r_dihedral_angle_3_deg 9.293 r_dihedral_angle_4_deg 7.053 r_dihedral_angle_1_deg 6.902 r_sphericity_bonded 5.284 r_rigid_bond_restr 2.311 r_angle_refined_deg 1.545 r_angle_other_deg 0.802 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 637 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing