☰ Navigation Tabs
The complex of alpha-Carbonic anhydrase from Thermovibrio ammonificans with inhibitor sulfanilamide.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KOP PDB ENTRY 1KOP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 50 MM BIS-TRIS PROPANE, 100 MM NACL, 12.5% PEG3350 PH 5.5.
Crystal Properties Matthews coefficient Solvent content 3.05 59.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.05 α = 90 b = 115.36 β = 90 c = 65.54 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 57.68 94.2 0.08 11.9 5.6 86560
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 67.4 0.49 2.1 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1KOP 1.55 34.89 81876 4317 94.61 0.17723 0.17574 0.1755 0.20506 0.2049 RANDOM 21.397
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 1.19 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.507 r_dihedral_angle_3_deg 13.025 r_dihedral_angle_4_deg 11.4 r_dihedral_angle_1_deg 5.86 r_scbond_it 3.366 r_mcangle_it 2.691 r_mcbond_it 2.02 r_angle_refined_deg 1.35 r_chiral_restr 0.098 r_bond_refined_d 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.507 r_dihedral_angle_3_deg 13.025 r_dihedral_angle_4_deg 11.4 r_dihedral_angle_1_deg 5.86 r_scbond_it 3.366 r_mcangle_it 2.691 r_mcbond_it 2.02 r_angle_refined_deg 1.35 r_chiral_restr 0.098 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3630 Nucleic Acid Atoms Solvent Atoms 689 Heterogen Atoms 130
Software Software Software Name Purpose XDS data reduction Aimless data scaling MOLREP phasing BALBES phasing REFMAC refinement