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Unravelling the multiple functions of the architecturally intricate Streptococcus pneumoniae beta-galactosidase, BgaA
Crystallization Crystal Properties Matthews coefficient Solvent content 3.89 68.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.77 α = 90 b = 116.77 β = 90 c = 220.04 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 19.94 99.7 0.11 10.9 4.6 42431 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 100 0.42 3.3 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 116.77 40273 2139 99.49 0.18031 0.1781 0.22126 0.1889 RANDOM 24.162
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.61 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.258 r_dihedral_angle_4_deg 19.532 r_dihedral_angle_3_deg 18.082 r_dihedral_angle_1_deg 6.709 r_angle_other_deg 2.377 r_mcangle_it 1.954 r_scbond_it 1.642 r_angle_refined_deg 1.416 r_mcbond_other 1.153 r_mcbond_it 1.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.258 r_dihedral_angle_4_deg 19.532 r_dihedral_angle_3_deg 18.082 r_dihedral_angle_1_deg 6.709 r_angle_other_deg 2.377 r_mcangle_it 1.954 r_scbond_it 1.642 r_angle_refined_deg 1.416 r_mcbond_other 1.153 r_mcbond_it 1.152 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6760 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 181
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing