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Crystal structure of human insulin analogue (NMe-AlaB8)-insulin crystal form II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MSO PDB ENTRY 1MSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 0.0375 M NA2SO4, PH 4.0
Crystal Properties Matthews coefficient Solvent content 2.36 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.3 α = 90 b = 46.19 β = 90 c = 51.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 32 98.9 0.4 22.3 6.5 21186
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 98.5 0.64 2.7 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MSO 1.4 31.97 20063 1086 98.53 0.1806 0.17958 0.1992 0.2077 RANDOM 19.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 -0.31 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.04 r_dihedral_angle_3_deg 11.166 r_dihedral_angle_4_deg 8.152 r_dihedral_angle_1_deg 5.949 r_scbond_it 3.689 r_mcangle_it 2.65 r_angle_refined_deg 2.537 r_mcbond_it 1.944 r_mcbond_other 1.881 r_angle_other_deg 1.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.04 r_dihedral_angle_3_deg 11.166 r_dihedral_angle_4_deg 8.152 r_dihedral_angle_1_deg 5.949 r_scbond_it 3.689 r_mcangle_it 2.65 r_angle_refined_deg 2.537 r_mcbond_it 1.944 r_mcbond_other 1.881 r_angle_other_deg 1.249 r_chiral_restr 0.219 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 786 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing