☰ Navigation Tabs
Yeast Asf1 bound to H3/H4G94P mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HUE PDB ENTRY 2HUE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.9 298 7.14% PEG 3350, 0.2 M Magnesium Acetate, pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.25 71.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.691 α = 90 b = 97.691 β = 90 c = 115.072 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 2009-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.0 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 37.24 100 0.09 8.4 5.14 28711 28711
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 0.474 2.4 5.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2HUE 2.35 15 25471 25471 1321 99.87 0.20597 0.20597 0.20414 0.2169 0.24027 0.2521 RANDOM 47.018
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.3 0.65 1.3 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.103 r_dihedral_angle_3_deg 16.326 r_dihedral_angle_4_deg 16.186 r_dihedral_angle_1_deg 4.99 r_scangle_it 3.66 r_scbond_it 2.113 r_angle_refined_deg 1.282 r_mcangle_it 1.261 r_mcbond_it 0.657 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.103 r_dihedral_angle_3_deg 16.326 r_dihedral_angle_4_deg 16.186 r_dihedral_angle_1_deg 4.99 r_scangle_it 3.66 r_scbond_it 2.113 r_angle_refined_deg 1.282 r_mcangle_it 1.261 r_mcbond_it 0.657 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2563 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 14
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement d*TREK data reduction d*TREK data scaling